Installation¶
My BIDS App
Install from github:
`
pip install -e http://github.com/akhanf/my_bids_app
`
Running the app¶
Do a dry-run first (-n) and simply print (-p) what would be run:
`
my_bids_app /path/to/bids/dir /path/to/output/dir participant -np
`
Run the app, using all cores:
`
my_bids_app /path/to/bids/dir /path/to/output/dir participant --cores all
`
If any workflow rules require containers, then run with the –use-singularity` option.