Installation

My BIDS App

Install from github:

` pip install -e http://github.com/akhanf/my_bids_app `

Running the app

Do a dry-run first (-n) and simply print (-p) what would be run:

` my_bids_app /path/to/bids/dir /path/to/output/dir participant -np `

Run the app, using all cores:

` my_bids_app /path/to/bids/dir /path/to/output/dir participant --cores all `

If any workflow rules require containers, then run with the –use-singularity` option.